Important events and news
In this section, we provide an overview of the events and workshops conducted within the scope of the project. This section also contains information about updates of the lectures and tutorials.
5-6th of Septemer, 2024
Information about the introduction to DFT at the NTNU, Norway. The course was intended to:
- give students a brief introduction to ab initio simulations,
- provide a comparison between DFT and MD simulations,
- perform some basic examples,
- give some introduction to the implementation of AI in these methods.
- here is the list of software necessary for the lectures: Moba Xterm terminal and Vesta
The course attendees can download the presentation from the following link. Second unfinished presentation "Introduction into AI and machine learning" download here.
29th of September, 2023 - final project remarks
We would like to thank all of the people who participated within this project and also to all who contributed to its outputs. Thanks to this project we were able to organise many meetings, mutual visits with the project partners in CZ and NO and also prepare the online tutorials reflecting requirements of our students and university staff for atomistic simulations.
The work we started as part of this project is not finished, because we are still in a close contact with our Norwegian colleagues and we also plan to update and extend the on-line lectures according to the needs of our students.
4-5th of Septemer, 2023
Beyond of the project scope, we organised another course focused on the introduction to DFT at the NTNU, Norway. The course was intended to:
- give students a brief introduction to ab initio simulations,
- provide a comparison between DFT and MD simulations,
- perform some basic examples,
- give some introduction to the implementation of AI in these methods.
The course attendees can download the presentation from the following link. Second unfinished presentation "Introduction into AI and machine learning" download here.
26th of May, 2023 - Workshop: Short introduction to molecular dynamics simulations
In cooperation with our fellow partners from Norway, we successfully held a workshop on atomistic simulations in 2022. Recognising that some colleagues were unable to join us, we have decided to organise a similar workshop again this year. The focus of the workshop will closely resemble that of last year’s event; however, this time, it will be a brief one-day introduction to molecular dynamics and the LAMMPS code. Detailed information about this event can be found in the following announcement or in the text provided below.
Workshop details:
- location: Faculty of Mechanical Engineering, Brno University of Technology, Technicka 2896/2, 616 69 Brno in room U7
- language: EN
- fee: free of charge
- max. participants: 20
- level: beginners
- registration: To register, simply send your name to sestak@fme.vutbr.cz Alternatively, you can join us directly at the workshop on Friday morning (subject to available capacity).
- hands-on sessions: For hands-on sessions, please bring your own laptop with an SSH client (Putty, MobaXterm, etc.) pre-installed. If necessary, we will be glad to assist you with the installation during the workshop.
- updates: Please follow this website to keep your information about the event up to date.
- Questions: If you have any questions, feel free to contact the workshop organiser at sestak@fme.vutbr.cz
- Workshop materials: Download the workshop materials here.
- Sample for GB study: GB sample
Workshop time schedule:
- 8:30 - 11:45 short introduction to molecular dynamics theory and hands on sessions
- 11:45 - 13:00 lunch break
- 13:00 - 15:30 hands on session with the LAMMPS code
25th of May, 2023 - Workshop on atomistic modelling in Brno area - MAMBA
Final remarks
Thank you for your participation in the workshop on atomistic modelling - MAMBA. We hope you found it informative and enjoyable. This event not only allowed us to delve into our field of research, but also provided a wonderful opportunity to meet in person. Your presence and contributions were greatly appreciated, and we look forward to a future cooperation.
Update - see below for the workshop details
- Getting together - The lecture room will be open from 8:30.
- The time schedule and programme can be found here.
- Location: Faculty of Mechanical Engineering, Brno University of Technology, Technická 2896/2, Brno, CZ in lecture room U7.
- Updates: Please follow this website to keep your information about the event up to date.
- Questions: If you have any questions, feel free to contact the workshop organiser at sestak@fme.vutbr.cz.
Last year we organised a workshop on atomistic modelling in cooperation with our colleagues from Norway. During the workshop, I enjoyed the opportunity to talk with you and some of you came up with the idea of organising another workshop where we can exchange our experience in atomistic simulations. There is a significant interest in atomistic modelling here in Brno, with many people engaged in various topics within the same area of expertise. Therefore, in cooperation with Prof. Miroslav Černý, we decided to organise this workshop. Our three colleagues from NTNU Norway will also be joining us, as they will be visiting our university during these days. The workshop presents an outstanding opportunity to:
- meet fellow professionals working in a similar field; while the event mainly targets scientists in Brno, visiting scientists and colleagues working outside Brno are also welcome
- present your current research topics/results/problems in atomistic modelling to other participants
- discuss possible issues, share ideas, and exchange experience regarding the usage of the cluster Mark
The workshop will be held at the Faculty of Mechanical Engineering, Brno University of Technology, Technicka 2896/2, Brno, CZ on 25th of May, 2023. For the location details, please refer to the map . Further information can be found in the announcement flyer.
Organisational information about the workshop:
- light refreshments will be served during the workshop,
- participants interested in presenting their research can do so in 12-25 minute presentations; essential equipment, including a PC with MS PowerPoint and Adobe Acrobat, will be provided,
- detailed information regarding the room and the time schedule will be sent to all registered participants at a later date.
September - November, 2022
Training lectures on ab initio simulations, an introduction to e-learning courses and their implementation into the multi-scale modelling of materials behaviour performed by the partner group - that was the purpose of Dr. Petr Šesták’s two-week visit to NTNU.
The PowerPoint presentation from the introductory lecture on Density Functional Theory (DFT) can be downloaded here .
Note:
One day, in the late afternoon, it was possible to enjoy a group event called “Mushroom picking”. Thus, in addition to the scientific and lecture activities planned during the visit, the participants had the opportunity to learn about mushroom hunting in Norway. After this event, it must be admitted that collecting mushrooms in the Czech Republic and Norway is fundamentally different. Those who are interested in mushroom picking can watch a YouTube video about the most common type of mushroom in Norway, “Traktkantarell”.
August, 2022 - Workshop on atomistic simulation
As part of this project, we are organising a workshop that provides a basic introduction to molecular dynamics simulations with the title „Atomistic modelling and molecular dynamics simulations in nanomechanics”. This workshop is scheduled to take place at Brno University of Technology from 2nd to 4th August, 2021. Within this event, three colleagues from our partner institution in Norway will visit our institute in Brno and deliver lectures on molecular dynamics simulations using the LAMMPS code. Further details about this event can be found in the flyer and in the organisational details.
Here, we summarise some information about the workshop:
- The workshop will take place in the lecture room U8, located in building A5 at Technicka 2896/2, Brno (see map for details). The workshop will start at 9:30 and the lecture room will be open from 9:00.
- For the hands-on sessions, you will need an SHH client: MobaXterm or Putty. To save some time, please install any SSH client in advance. We recommend MobaXterm, as this client allows you to download/upload files to your local computer.
- Software for crystal structure visualisation and animations from the LAMMPS code: Vesta or Ovito.
- The LAMMPS files for the workshop and hands-on sessions are available here.
- If you want to test your SSH connection to the cluster, please follow the tutorial on this website: lectures > Introduction > Login. If you want to test your connection before the workshop and you have not received the password yet, please send an email to sestak(at)fme.vutbr.cz.
- The login details for the SSH connection are as follows - IP: 147.229.85.221 PORT:2222.
- The files for the LAMMPS tutorial are also located in the cluster directory /home/WORKSHOP. You can copy them to your home directory.
We would like to thank all participants and our colleagues from Norway for the pleasant and stimulating workshop. We hope you enjoyed the event.
June, 2022
As part of a different project, we attended the ECCOMAS 2022 Conference that was held in Oslo, Norway. It was a unique opportunity to meet our colleagues from Norway and discuss upcoming project activities.
October, 2021 - Visit to our Norwegian partner at NTNU
In October 2021, we had the opportunity to visit our project partner at the Norwegian University of Science and Technology. Within this visit, we gained insight into our partner’s ongoing research projects. It should be noted, that in most cases, these projects serve as research topics for master’s and PhD students. During our visit, we organised a two-day workshop on the introduction to ab initio calculations, presented our ongoing research topics to our partner, and participated in group meetings in the Nanomechanical lab.
Surprisingly, this visit went smoothly in light of the pandemic situation, as all Covid restrictions had been lifted throughout Norway one week prior to our arrival. It was wonderful to witness how people in Norway started to live a full life again.
Presentations for download
Here we summarize all our presentations made during the project for all people people who attended our events.
description | file to download | author |
---|---|---|
DFT introduction - Nanomechanics course organized at NTNU | DFT_Nanomechanics_lecture_2023 | Petr Sestak |
Basic introduction into machine learning potentials - NTNU research group meeting | ML_presentation_introduction.pptx | Petr Sestak |
MLFF - MD with almost DFT precision - workshop August, 2022 | presentation.pptx | Petr Sestak |
Molecular Dynamic Simulation theories and principles - workshop August, 2022 | 5.26_MD_Tutorial.pptx | Yifan Zhang |
Lammps Tutorial - workshop August, 2022 | Lammps_Tutorial.pdf | Rui Ma |
Lammps_Tutorial_1-2 - workshop August, 2022 | Lammps_Tutorial_1-2.pdf | |
Lammps_Tutorial_3-4 - workshop August, 2022 | Lammps_Tutorial_3-4.pdf | |
Molecular Dynamics Simulations - workshop August, 2022 | Molecular_Dynamics_Simulations.pdf | Senbo Xiao |